Curriculum vitæ

Education

• Ph.D in Engineering Physics, McMaster University, Hamilton, ON, Canada, 2014
  • Thesis : An Investigation into the Role of Energy and Symmetry at Epitaxial Interfaces
  • Advisor: Dr. John S. Preston
• B.Eng. in Engineering Physics, McMaster University, Hamilton, ON, Canada, 2007

Publications

A Diagnosis and Biotype Comparison Across the Psychosis Spectrum: Investigating Volume and Shape Amygdala-Hippocampal Differences from the B-SNIP Study

Guimond, Synthia, Gu, Feng, Shannon, Holly, Kelly, Sinead, Mike, Luke, Devenyi, Gabriel A, Chakravarty, M Mallar, Sweeney, John A, Pearlson, Godfrey, Clementz, Brett A, Tamminga, Carol, Keshavan, Matcheri, "A Diagnosis and Biotype Comparison Across the Psychosis Spectrum: Investigating Volume and Shape Amygdala-Hippocampal Differences from the B-SNIP Study." Schizophrenia bulletin, 2021.

Hippocampal subfield volumes across the healthy lifespan and the effects of MR sequence on estimates

Bussy, Aurélie, Plitman, Eric, Patel, Raihaan, Tullo, Stephanie, Salaciak, Alyssa, Bedford, Saashi A, Farzin, Sarah, Béland, Marie-Lise, Valiquette, Vanessa, Kazazian, Christina, Tardif, Christine Lucas, Devenyi, Gabriel A, Chakravarty, M Mallar, {Alzheimer's Disease Neuroimaging Initiative}, "Hippocampal subfield volumes across the healthy lifespan and the effects of MR sequence on estimates." NeuroImage, 2021.

Examining the Boundary Sharpness Coefficient as an Index of Cortical Microstructure in Autism Spectrum Disorder

Olafson, Emily, Bedford, Saashi A, Devenyi, Gabriel A, Patel, Raihaan, Tullo, Stephanie, Park, Min Tae M, Parent, Olivier, Anagnostou, Evdokia, Baron-Cohen, Simon, Bullmore, Edward T, Chura, Lindsay R, Craig, Michael C, Ecker, Christine, Floris, Dorothea L, Holt, Rosemary J, Lenroot, Rhoshel, Lerch, Jason P, Lombardo, Michael V, Murphy, Declan G M, Raznahan, Armin, Ruigrok, Amber N V, Spencer, Michael D, Suckling, John, Taylor, Margot J, {MRC AIMS Consortium}, Lai, Meng-Chuan, Chakravarty, M Mallar, "Examining the Boundary Sharpness Coefficient as an Index of Cortical Microstructure in Autism Spectrum Disorder." Cerebral cortex, 2021.

Bilateral Amygdala Radio-Frequency Ablation for Refractory Aggressive Behavior Alters Local Cortical Thickness to a Pattern Found in Non-refractory Patients

Gouveia, Flavia Venetucci, Germann, Jürgen, Devenyi, Gabriel A, Fonoff, Erich T, Morais, Rosa M C B, Brentani, Helena, Chakravarty, M Mallar, Martinez, Raquel C R, "Bilateral Amygdala Radio-Frequency Ablation for Refractory Aggressive Behavior Alters Local Cortical Thickness to a Pattern Found in Non-refractory Patients." Frontiers in human neuroscience, 2021.

Longitudinal quantification of metabolites and macromolecules reveals age- and sex-related changes in the healthy Fischer 344 rat brain

Fowler, Caitlin F, Madularu, Dan, Dehghani, Masoumeh, Devenyi, Gabriel A, Near, Jamie, "Longitudinal quantification of metabolites and macromolecules reveals age- and sex-related changes in the healthy Fischer 344 rat brain." Neurobiology of aging, 2021.

Cumulative exposure to ADHD medication is inversely related to hippocampus subregional volume in children

Fotopoulos, Nellie H, Devenyi, Gabriel A, Guay, Stephanie, Sengupta, Sarojini M, Mallar Chakravarty, M, Grizenko, Natalie, Karama, Sherif, Joober, Ridha, "Cumulative exposure to ADHD medication is inversely related to hippocampus subregional volume in children." NeuroImage: Clinical, 2021.

The ANTsX ecosystem for quantitative biological and medical imaging

Tustison, Nicholas J, Cook, Philip A, Holbrook, Andrew J, Johnson, Hans J, Muschelli, John, Devenyi, Gabriel A, Duda, Jeffrey T, Das, Sandhitsu R, Cullen, Nicholas C, Gillen, Daniel L, Yassa, Michael A, Stone, James R, Gee, James C, Avants, Brian B, "The ANTsX ecosystem for quantitative biological and medical imaging." Scientific reports, 2021.

Maternal cafeteria diet exposure primes depression-like behavior in the offspring evoking lower brain volume related to changes in synaptic terminals and gliosis

Trujillo-Villarreal, Luis A, Romero-Díaz, Viktor J, Marino-Martínez, Iván Alberto, Fuentes-Mera, Lizeth, Ponce-Camacho, Marco Antonio, Devenyi, Gabriel A, Mallar Chakravarty, M, Camacho-Morales, Alberto, Garza-Villarreal, Eduardo E, "Maternal cafeteria diet exposure primes depression-like behavior in the offspring evoking lower brain volume related to changes in synaptic terminals and gliosis." Translational psychiatry, 2021.

The ratio of posterior-anterior medial temporal lobe volumes predicts source memory performance in healthy young adults

Snytte, Jamie, Elshiekh, Abdelhalim, Subramaniapillai, Sivaniya, Manning, Lyssa, Pasvanis, Stamatoula, Devenyi, Gabriel A, Olsen, Rosanna K, Rajah, Maria Natasha, "The ratio of posterior-anterior medial temporal lobe volumes predicts source memory performance in healthy young adults." Hippocampus, 2020.

Fully Automated Habenula Segmentation Provides Robust and Reliable Volume Estimation Across Large Magnetic Resonance Imaging Datasets, Suggesting Intriguing Developmental Trajectories in Psychiatric Disease

Germann, Jürgen, Gouveia, Flavia Venetucci, Martinez, Raquel C R, Zanetti, Marcus Vinicius, de Souza Duran, Fábio Luís, Chaim-Avancini, Tiffany M, Serpa, Mauricio H, Chakravarty, M Mallar, Devenyi, Gabriel A, "Fully Automated Habenula Segmentation Provides Robust and Reliable Volume Estimation Across Large Magnetic Resonance Imaging Datasets, Suggesting Intriguing Developmental Trajectories in Psychiatric Disease." Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 2020.

Refractoriness of aggressive behaviour to pharmacological treatment: cortical thickness analysis in autism spectrum disorder

Gouveia, Flavia Venetucci, Germann, Jürgen, Devenyi, Gabriel A, Morais, Rosa M C B, Santos, Ana Paula M, Fonoff, Erich T, Hamani, Clement, Brentani, Helena, Chakravarty, M Mallar, Martinez, Raquel C R, "Refractoriness of aggressive behaviour to pharmacological treatment: cortical thickness analysis in autism spectrum disorder." BJPsych open, 2020.

Amyloid-beta modulates the association between neurofilament light chain and brain atrophy in Alzheimer's disease

Kang, Min Su, Aliaga, Arturo Aliaga, Shin, Monica, Mathotaarachchi, Sulantha, Benedet, Andrea L, Pascoal, Tharick A, Therriault, Joseph, Chamoun, Mira, Savard, Melissa, Devenyi, Gabriel A, Mathieu, Axel, Chakravarty, M Mallar, Sandelius, Åsa, Blennow, Kaj, Zetterberg, Henrik, Soucy, Jean-Paul, Cuello, A Claudio, Massarweh, Gassan, Gauthier, Serge, Rosa-Neto, Pedro, {Alzheimer's Disease Neuroimaging Initiative}, "Amyloid-beta modulates the association between neurofilament light chain and brain atrophy in Alzheimer's disease." Molecular psychiatry, 2020.

Using Non-Negative Matrix Factorization to Examine Treatment Resistance and Response in Patients With Schizophrenia: A Multimodal Imaging Study

Plitman, Eric, Ochi, Ryo, Patel, Raihaan, Tsugawa, Sakiko, Tarumi, Ryosuke, Honda, Shiori, Matsushita, Karin, Fujii, Shinya, Uchida, Hiroyuki, Mimura, Masaru, Noda, Yoshihiro, Devenyi, Gabriel A, Nakajima, Shinichiro, Chakravarty, Mallar, "Using Non-Negative Matrix Factorization to Examine Treatment Resistance and Response in Patients With Schizophrenia: A Multimodal Imaging Study." Biological psychiatry, 2020.

Spatial Patterning of Tissue Volume Loss in Schizophrenia Reflects Brain Network Architecture

Shafiei, Golia, Markello, Ross D, Makowski, Carolina, Talpalaru, Alexandra, Kirschner, Matthias, Devenyi, Gabriel A, Guma, Elisa, Hagmann, Patric, Cashman, Neil R, Lepage, Martin, Chakravarty, M Mallar, Dagher, Alain, Mišić, Bratislav, "Spatial Patterning of Tissue Volume Loss in Schizophrenia Reflects Brain Network Architecture." Biological psychiatry, 2020.

An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain

Goerzen, Dana, Fowler, Caitlin, Devenyi, Gabriel A, Germann, Jurgen, Madularu, Dan, Chakravarty, M Mallar, Near, Jamie, "An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain." Scientific reports, 2020.

Large-scale analyses of the relationship between sex, age and intelligence quotient heterogeneity and cortical morphometry in autism spectrum disorder

Bedford, Saashi A, Park, Min Tae M, Devenyi, Gabriel A, Tullo, Stephanie, Germann, Jurgen, Patel, Raihaan, Anagnostou, Evdokia, Baron-Cohen, Simon, Bullmore, Edward T, Chura, Lindsay R, Craig, Michael C, Ecker, Christine, Floris, Dorothea L, Holt, Rosemary J, Lenroot, Rhoshel, Lerch, Jason P, Lombardo, Michael V, Murphy, Declan G M, Raznahan, Armin, Ruigrok, Amber N V, Smith, Elizabeth, Spencer, Michael D, Suckling, John, Taylor, Margot J, Thurm, Audrey, {MRC AIMS Consortium}, Lai, Meng-Chuan, Chakravarty, M Mallar, "Large-scale analyses of the relationship between sex, age and intelligence quotient heterogeneity and cortical morphometry in autism spectrum disorder." Molecular psychiatry, 2020.

Altered neurotransmission and neuroimaging biomarkers of chronic arsenic poisoning in wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus) breeding near the City of Yellowknife, Northwest Territories (Canada)

Amuno, S, Rudko, D A, Gallino, D, Tuznik, M, Shekh, K, Kodzhahinchev, V, Niyogi, S, Chakravarty, M M, Devenyi, G A, "Altered neurotransmission and neuroimaging biomarkers of chronic arsenic poisoning in wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus) breeding near the City of Yellowknife, Northwest Territories (Canada)." The Science of the total environment, 2020.

Investigating microstructural variation in the human hippocampus using non-negative matrix factorization

Patel, Raihaan, Steele, Christopher J, Chen, Anthony G X, Patel, Sejal, Devenyi, Gabriel A, Germann, Jürgen, Tardif, Christine L, Chakravarty, M Mallar, "Investigating microstructural variation in the human hippocampus using non-negative matrix factorization." NeuroImage, 2020.

MR-based age-related effects on the striatum, globus pallidus, and thalamus in healthy individuals across the adult lifespan

Tullo, Stephanie, Patel, Raihaan, Devenyi, Gabriel A, Salaciak, Alyssa, Bedford, Saashi A, Farzin, Sarah, Wlodarski, Nancy, Tardif, Christine L, {PREVENT-AD Research Group}, Breitner, John C S, Chakravarty, M Mallar, "MR-based age-related effects on the striatum, globus pallidus, and thalamus in healthy individuals across the adult lifespan." Human brain mapping, 2019.

Identifying schizophrenia subgroups using clustering and supervised learning

Talpalaru, Alexandra, Bhagwat, Nikhil, Devenyi, Gabriel A, Lepage, Martin, Chakravarty, M Mallar, "Identifying schizophrenia subgroups using clustering and supervised learning." Schizophrenia research, 2019.

Can we accurately classify schizophrenia patients from healthy controls using magnetic resonance imaging and machine learning? A multi-method and multi-dataset study

Winterburn, Julie L, Voineskos, Aristotle N, Devenyi, Gabriel A, Plitman, Eric, de la Fuente-Sandoval, Camilo, Bhagwat, Nikhil, Graff-Guerrero, Ariel, Knight, Jo, Chakravarty, M Mallar, "Can we accurately classify schizophrenia patients from healthy controls using magnetic resonance imaging and machine learning? A multi-method and multi-dataset study." Schizophrenia research, 2019.

Tractography-based targeting of the ventral intermediate nucleus: accuracy and clinical utility in MRgFUS thalamotomy

Ranjan, Manish, Elias, Gavin J B, Boutet, Alexandre, Zhong, Jidan, Chu, Powell, Germann, Jurgen, Devenyi, Gabriel A, Chakravarty, M Mallar, Fasano, Alfonso, Hynynen, Kullervo, Lipsman, Nir, Hamani, Clement, Kucharczyk, Walter, Schwartz, Michael L, Lozano, Andres M, Hodaie, Mojgan, "Tractography-based targeting of the ventral intermediate nucleus: accuracy and clinical utility in MRgFUS thalamotomy." Journal of neurosurgery, 2019.

Longitudinal assessment of the neuroanatomical consequences of deep brain stimulation: Application of fornical DBS in an Alzheimer's mouse model

Gallino, Daniel, Devenyi, Gabriel A, Germann, Jürgen, Guma, Elisa, Anastassiadis, Chloe, Chakravarty, M Mallar, "Longitudinal assessment of the neuroanatomical consequences of deep brain stimulation: Application of fornical DBS in an Alzheimer's mouse model." Brain research, 2019.

Spatial patterning of tissue volume deformation in schizophrenia reflects brain network architecture

Shafiei, Golia, Markello, Ross D, Talpalaru, Alexandra, Makowski, Carolina, Kirschner, Matthias, Devenyi, Gabriel A, Hagmann, Patric, Cashman, Neil R, Lepage, Martin, Mallar Chakravarty, M, Dagher, Alain, Mišić, Bratislav, "Spatial patterning of tissue volume deformation in schizophrenia reflects brain network architecture." bioRxiv, 2019.

Role of D3 dopamine receptors in modulating neuroanatomical changes in response to antipsychotic administration

Guma, Elisa, Rocchetti, Jill, Devenyi, Gabriel A, Tanti, Arnaud, Mathieu, Axel P, Lerch, Jason P, Elgbeili, Guillaume, Courcot, Blandine, Mechawar, Naguib, Chakravarty, M Mallar, Giros, Bruno, "Role of D3 dopamine receptors in modulating neuroanatomical changes in response to antipsychotic administration." Scientific reports, 2019.

Polygenic Risk and Neural Substrates of Attention-Deficit/Hyperactivity Disorder Symptoms in Youths With a History of Mild Traumatic Brain Injury

Stojanovski, Sonja, Felsky, Daniel, Viviano, Joseph D, Shahab, Saba, Bangali, Rutwik, Burton, Christie L, Devenyi, Gabriel A, O'Donnell, Lauren J, Szatmari, Peter, Chakravarty, M Mallar, Ameis, Stephanie, Schachar, Russell, Voineskos, Aristotle N, Wheeler, Anne L, "Polygenic Risk and Neural Substrates of Attention-Deficit/Hyperactivity Disorder Symptoms in Youths With a History of Mild Traumatic Brain Injury." Biological psychiatry, 2019.

Clinical, imaging genetics and deformation based morphometry study of longitudinal changes after surgery for intractable aggressive behaviour

Gouveia, Flavia Venetucci, Germann, Jurgen, de Morais, Rosa Magaly Campelo Borba, Fonoff, Erich Talamoni, Hamani, Clement, Alho, Eduardo Joaquim, Brentani, Helena, Martins, Ana Paula, Devenyi, Gabriel A, Patel, Raihaan, Steele, Christopher J, Gramer, Robert, Mallar Chakravarty, M, Martinez, Raquel Chacon Ruiz, "Clinical, imaging genetics and deformation based morphometry study of longitudinal changes after surgery for intractable aggressive behaviour." bioRxiv, 2019.

Contributions of a high-fat diet to Alzheimer's disease-related decline: A longitudinal behavioural and structural neuroimaging study in mouse models

Rollins, Colleen P E, Gallino, Daniel, Kong, Vincent, Ayranci, Gülebru, Devenyi, Gabriel A, Germann, Jürgen, Chakravarty, M Mallar, "Contributions of a high-fat diet to Alzheimer's disease-related decline: A longitudinal behavioural and structural neuroimaging study in mouse models." NeuroImage. Clinical, 2019.

Focused ultrasound thalamotomy location determines clinical benefits in patients with essential tremor

Boutet, Alexandre, Ranjan, Manish, Zhong, Jidan, Germann, Jurgen, Xu, David, Schwartz, Michael L, Lipsman, Nir, Hynynen, Kullervo, Devenyi, Gabriel A, Chakravarty, Mallar, Hlasny, Eugen, Llinas, Maheleth, Lozano, Christopher S, Elias, Gavin J B, Chan, Jason, Coblentz, Ailish, Fasano, Alfonso, Kucharczyk, Walter, Hodaie, Mojgan, Lozano, Andres M, "Focused ultrasound thalamotomy location determines clinical benefits in patients with essential tremor." Brain: a journal of neurology, 2018.

Reduced resting-state functional connectivity of the basolateral amygdala to the medial prefrontal cortex in preweaning rats exposed to chronic early-life stress

Guadagno, Angela, Kang, Min Su, Devenyi, Gabriel A, Mathieu, Axel P, Rosa-Neto, Pedro, Chakravarty, Mallar, Walker, Claire-Dominique, "Reduced resting-state functional connectivity of the basolateral amygdala to the medial prefrontal cortex in preweaning rats exposed to chronic early-life stress." Brain structure & function, 2018.

Epitaxial thin film transfer for flexible devices from reusable substrates

Jovanovic, S M, Devenyi, G A, Kuyanov, P, Carvalho, J L, Meinander, K, LaPierre, R R, Preston, J S, "Epitaxial thin film transfer for flexible devices from reusable substrates." Materials Research Express, 2018.

Dissecting genetic cross-talk between ADHD and other neurodevelopmental disorders: Evidence from behavioural, pharmacological and brain imaging investigations

Sengupta, Sarojini M, Fotopoulos, Nellie, Devenyi, Gabriel A, Fortier, Marie-Ève, Ter-Stepanian, Marina, Sagliker, Saba, Karama, Sherif, Mallar Chakravarty, M, Labbe, Aurelie, Grizenko, Natalie, Joober, Ridha, "Dissecting genetic cross-talk between ADHD and other neurodevelopmental disorders: Evidence from behavioural, pharmacological and brain imaging investigations." Psychiatry research, 2018.

A 3D MRI-based atlas of a lizard brain

Hoops, Daniel, Desfilis, Ester, Ullmann, Jeremy F P, Janke, Andrew L, Stait-Gardner, Timothy, Devenyi, Gabriel A, Price, William S, Medina, Loreta, Whiting, Martin J, Keogh, J Scott, "A 3D MRI-based atlas of a lizard brain." The Journal of comparative neurology, 2018.

A multicohort, longitudinal study of cerebellar development in attention deficit hyperactivity disorder

Shaw, Philip, Ishii-Takahashi, Ayaka, Park, Min Tae, Devenyi, Gabriel A, Zibman, Chava, Kasparek, Steven, Sudre, Gustavo, Mangalmurti, Aman, Hoogman, Martine, Tiemeier, Henning, von Polier, Georg, Shook, Devon, Muetzel, Ryan, Chakravarty, M Mallar, Konrad, Kerstin, Durston, Sarah, White, Tonya, "A multicohort, longitudinal study of cerebellar development in attention deficit hyperactivity disorder." Journal of child psychology and psychiatry, and allied disciplines, 2018.

Early-in-life neuroanatomical and behavioural trajectories in a triple transgenic model of Alzheimer's disease

Kong, Vincent, Devenyi, Gabriel A, Gallino, Daniel, Ayranci, Gülebru, Germann, Jürgen, Rollins, Colleen, Chakravarty, M Mallar, "Early-in-life neuroanatomical and behavioural trajectories in a triple transgenic model of Alzheimer's disease." Brain structure & function, 2018.

Regional brain volume changes following chronic antipsychotic administration are mediated by the dopamine D2 receptor

Guma, Elisa, Rocchetti, Jill, Devenyi, Gabriel A, Tanti, Arnaud, Mathieu, Axel, Lerch, Jason P, Elgbeili, Guillaume, Courcot, Blandine, Mechawar, Naguib, Chakravarty, M Mallar, Giros, Bruno, "Regional brain volume changes following chronic antipsychotic administration are mediated by the dopamine D2 receptor." NeuroImage, 2018.

Warping an atlas derived from serial histology to 5 high-resolution MRIs

Tullo, Stephanie, Devenyi, Gabriel A, Patel, Raihaan, Park, Min Tae M, Collins, D Louis, Chakravarty, M Mallar, "Warping an atlas derived from serial histology to 5 high-resolution MRIs." Scientific data, 2018.

Patterns of reduced cortical thickness and striatum pathological morphology in cocaine addiction

Garza-Villarreal, Eduardo A, Alcala, Ruth, Balducci, Thania, Angeles-Valdez, Diego, Chakravarty, Mallar, Devenyi, Gabriel A, Gonzalez-Olvera, Jorge J, "Patterns of reduced cortical thickness and striatum pathological morphology in cocaine addiction." bioRxiv, 2018.

Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging

Amaral, Robert S C, Park, Min Tae M, Devenyi, Gabriel A, Lynn, Vivian, Pipitone, Jon, Winterburn, Julie, Chavez, Sofia, Schira, Mark, Lobaugh, Nancy J, Voineskos, Aristotle N, Pruessner, Jens C, Chakravarty, M Mallar, {Alzheimer's Disease Neuroimaging Initiative}, "Manual segmentation of the fornix, fimbria, and alveus on high-resolution 3T MRI: Application via fully-automated mapping of the human memory circuit white and grey matter in healthy and pathological aging." NeuroImage, 2018.

Evaluating accuracy of striatal, pallidal, and thalamic segmentation methods: Comparing automated approaches to manual delineation

Makowski, Carolina, Béland, Sophie, Kostopoulos, Penelope, Bhagwat, Nikhil, Devenyi, Gabriel A, Malla, Ashok K, Joober, Ridha, Lepage, Martin, Chakravarty, M Mallar, "Evaluating accuracy of striatal, pallidal, and thalamic segmentation methods: Comparing automated approaches to manual delineation." NeuroImage, 2018.

Ten simple rules for collaborative lesson development

Devenyi, Gabriel A, Emonet, Rémi, Harris, Rayna M, Hertweck, Kate L, Irving, Damien, Milligan, Ian, Wilson, Greg, "Ten simple rules for collaborative lesson development." PLoS computational biology, 2018.

Regionally specific changes in the hippocampal circuitry accompany progression of cerebrospinal fluid biomarkers in preclinical Alzheimer's disease

Tardif, Christine L, Devenyi, Gabriel A, Amaral, Robert S C, Pelleieux, Sandra, Poirier, Judes, Rosa-Neto, Pedro, Breitner, John, Chakravarty, M Mallar, {PREVENT-AD Research Group}, "Regionally specific changes in the hippocampal circuitry accompany progression of cerebrospinal fluid biomarkers in preclinical Alzheimer's disease." Human brain mapping, 2018.

Neuroanatomical and Symptomatic Sex Differences in Individuals at Clinical High Risk for Psychosis

Guma, Elisa, Devenyi, Gabriel A, Malla, Ashok, Shah, Jai, Chakravarty, M Mallar, Pruessner, Marita, "Neuroanatomical and Symptomatic Sex Differences in Individuals at Clinical High Risk for Psychosis." Frontiers in psychiatry / Frontiers Research Foundation, 2017.

Cerebellum and attention to the eyes in autism

Laidi, C, Boisgontier, J, Chakravarty, M, Hotier, S, D'Albis, M, Mangin, J, Devenyi, G, Delorme, R, Bolognani, F, Czech, C, Bouvard, M, Gras, D, Petit, J, Mishchenko, M, Gaman, A, Scheid, I, Leboyer, M, Zalla, T, Houenou, J, "Cerebellum and attention to the eyes in autism." European neuropsychopharmacology: the journal of the European College of Neuropsychopharmacology, 2017.

Heritability of hippocampal subfield volumes using a twin and non-twin siblings design

Patel, Sejal, Park, Min Tae M, Devenyi, Gabriel A, Patel, Raihaan, Masellis, Mario, Knight, Jo, Chakravarty, M Mallar, "Heritability of hippocampal subfield volumes using a twin and non-twin siblings design." Human brain mapping, 2017.

Cerebellar anatomical alterations and attention to eyes in autism

Laidi, Charles, Boisgontier, Jennifer, Chakravarty, M Mallar, Hotier, Sevan, d'Albis, Marc-Antoine, Mangin, Jean-François, Devenyi, Gabriel A, Delorme, Richard, Bolognani, Federico, Czech, Christian, Bouquet, Céline, Toledano, Elie, Bouvard, Manuel, Gras, Doriane, Petit, Julie, Mishchenko, Marina, Gaman, Alexandru, Scheid, Isabelle, Leboyer, Marion, Zalla, Tiziana, Houenou, Josselin, "Cerebellar anatomical alterations and attention to eyes in autism." Scientific reports, 2017.

ELEVATED CSF LEVELS OF NEUROFILAMENT LIGHT CHAIN IS ASSOCIATED WITH GRAY MATTER NEURODEGENERATION IN BOTH HUMANS AND TRANSGENIC RAT MODEL OF ALZHEIMER's DISEASE

Kang, Min Su, Shin, Monica, Zimmer, Eduardo R, Mathotaarachchi, Sulantha S, Pascoal, Tharick A, Ng, Kok Pin, Therriault, Joseph, Devenyi, Gabriel, Chakravarty, Mallar, Blennow, Kaj, Zetterberg, Henrik, Soucy, Jean-Paul, Poirier, Judes, Gauthier, Serge, Cuello, A Claudio, Rosa-Neto, Pedro, "ELEVATED CSF LEVELS OF NEUROFILAMENT LIGHT CHAIN IS ASSOCIATED WITH GRAY MATTER NEURODEGENERATION IN BOTH HUMANS AND TRANSGENIC RAT MODEL OF ALZHEIMER's DISEASE." Alzheimer's & dementia: the journal of the Alzheimer's Association, 2017.

The effect of crack cocaine addiction and age on the microstructure and morphology of the human striatum and thalamus using shape analysis and fast diffusion kurtosis imaging

Garza-Villarreal, E A, Chakravarty, M M, Hansen, B, Eskildsen, S F, Devenyi, G A, Castillo-Padilla, D, Balducci, T, Reyes-Zamorano, E, Jespersen, S N, Perez-Palacios, P, Patel, R, Gonzalez-Olvera, J J, "The effect of crack cocaine addiction and age on the microstructure and morphology of the human striatum and thalamus using shape analysis and fast diffusion kurtosis imaging." Translational psychiatry, 2017.

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods

Gorgolewski, Krzysztof J, Alfaro-Almagro, Fidel, Auer, Tibor, Bellec, Pierre, Capotă, Mihai, Chakravarty, M Mallar, Churchill, Nathan W, Cohen, Alexander Li, Craddock, R Cameron, Devenyi, Gabriel A, Eklund, Anders, Esteban, Oscar, Flandin, Guillaume, Ghosh, Satrajit S, Guntupalli, J Swaroop, Jenkinson, Mark, Keshavan, Anisha, Kiar, Gregory, Liem, Franziskus, Raamana, Pradeep Reddy, Raffelt, David, Steele, Christopher J, Quirion, Pierre-Olivier, Smith, Robert E, Strother, Stephen C, Varoquaux, Gaël, Wang, Yida, Yarkoni, Tal, Poldrack, Russell A, "BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods." PLoS computational biology, 2017.

Advanced processing and simulation of MRS data using the FID appliance (FID-A)-An open source, MATLAB-based toolkit

Simpson, Robin, Devenyi, Gabriel A, Jezzard, Peter, Hennessy, T Jay, Near, Jamie, "Advanced processing and simulation of MRS data using the FID appliance (FID-A)-An open source, MATLAB-based toolkit." Magnetic resonance in medicine: official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, 2017.

INTERPRETING DISEASE HETEROGENEITY IN ALZHEIMER'S AND PARKINSON'S DISEASE

Chakravarty, Mallar, Amaral, Robert S C, Bhagwat, Nikhil, Patel, Raihaan, Garza-Villarreal, Eduardo, Devenyi, Gabriel, Park, Min Tae M, "INTERPRETING DISEASE HETEROGENEITY IN ALZHEIMER'S AND PARKINSON'S DISEASE." Alzheimer's & dementia: the journal of the Alzheimer's Association, 2016.

Purified water etching of native oxides on heteroepitaxial CdTe thin films

Meinander, Kristoffer, Carvalho, Jessica L, Miki, Carley, Rideout, Joshua, Jovanovic, Stephen M, Devenyi, Gabriel A, Preston, John S, "Purified water etching of native oxides on heteroepitaxial CdTe thin films." Journal of physics D: Applied physics, 2014.

Optical characterization of epitaxial single crystal CdTe thin films on Al2O3 (0001) substrates

Jovanovic, S M, Devenyi, G A, Jarvis, V M, Meinander, K, Haapamaki, C M, Kuyanov, P, Gerber, M, LaPierre, R R, Preston, J S, "Optical characterization of epitaxial single crystal CdTe thin films on Al2O3 (0001) substrates." Thin solid films, 2014.

Optimum reactive ion etching of x-cut quartz using SF6 and Ar

Minnick, M D, Devenyi, G A, Kleiman, R N, "Optimum reactive ion etching of x-cut quartz using SF6 and Ar." Journal of micromechanics and microengineering: structures, devices, and systems, 2013.

Tilted epitaxy on (211)-oriented substrates

Woo, S Y, Devenyi, G A, Ghanad-Tavakoli, S, Kleiman, R N, Preston, J S, Botton, G A, "Tilted epitaxy on (211)-oriented substrates." Applied physics letters, 2013.

Photovoltaic properties of M-phthalocyanine/fullerene organic solar cells

Yuen, Avery P, Jovanovic, Stephen M, Hor, Ah-Mee, Klenkler, Richard A, Devenyi, Gabriel A, Loutfy, Rafik O, Preston, John S, "Photovoltaic properties of M-phthalocyanine/fullerene organic solar cells." Solar Energy, 2012.

Manipulating the size distribution of supported gold nanostructures

Sundar, A, Hughes, R A, Farzinpour, P, Gilroy, K D, Devenyi, G A, Preston, J S, Neretina, S, "Manipulating the size distribution of supported gold nanostructures." Applied physics letters, 2012.

The role of vicinal silicon surfaces in the formation of epitaxial twins during the growth of III-V thin films

Devenyi, G A, Woo, S Y, Ghanad-Tavakoli, S, Hughes, R A, Kleiman, R N, Botton, G A, Preston, J S, "The role of vicinal silicon surfaces in the formation of epitaxial twins during the growth of III-V thin films." Journal of applied physics, 2011.

Epitaxially driven formation of intricate supported gold nanostructures on a lattice-matched oxide substrate

Devenyi, Gabriel A, Li, Jianfeng, Hughes, Robert A, Shi, An-Chang, Mascher, Peter, Preston, John S, "Epitaxially driven formation of intricate supported gold nanostructures on a lattice-matched oxide substrate." Nano letters, 2009.

Atypical grain growth for (211) CdTe films deposited on surface reconstructed (100) SrTiO3 substrates

Neretina, S, Hughes, R A, Devenyi, G A, Sochinskii, N V, Preston, J S, Mascher, P, "Atypical grain growth for (211) CdTe films deposited on surface reconstructed (100) SrTiO3 substrates." Applied surface science, 2009.

The role of substrate surface alteration in the fabrication of vertically aligned CdTe nanowires

Neretina, S, Hughes, R A, Devenyi, G A, Sochinskii, N V, Preston, J S, Mascher, P, "The role of substrate surface alteration in the fabrication of vertically aligned CdTe nanowires." Nanotechnology, 2008.

Talks

MRS Simulation & Preprocessing Using the FID-A Toolkit

July 01, 2017

Invited Presentation at MR Spectroscopy Study Group, ISMRM Virtual Meetings, Online

Skills for Scientific Computing

May 01, 2015

Invited Presentation at Software Carpentry Workshop, BIO5 Institute & iPlant Collaborative, Arizona State University, Tempe, AZ, USA

Skills for Scientific Computing

January 01, 2015

Invited Presentation at Software Carpentry Workshop, Department of Physics, McGill University, Montreal, QC, CA

Skills for Scientific Computing

November 01, 2014

Invited Presentation at Software Carpentry Workshop, Faculty of Medicine, University de Montreal, Saint-Hyacinthe, QC, Canada

Skills for Scientific Computing

June 01, 2014

Invited Presentation at Software Carpentry Workshop, Statistical Computing Unit, Cornell University, Ithaca, NY, USA

LaTeX for Preparation of Scientific Documents and Theses

June 01, 2014

Invited Presentation at Department of Electrical and Computer Engineering, McMaster University, Hamilton, ON, Canada

Skills for Scientific Computing

May 01, 2014

Invited Presentation at Software Carpentry Workshop, Department of Physics & Astronomy, McMaster University, Hamilton, ON, Canada

LaTeX for Preparation of Scientific Documents and Theses

May 01, 2014

Invited Presentation at Department of Medical Physics, McMaster University, Hamilton, ON, Canada

LaTeX for Preparation of Scientific Documents and Theses

May 01, 2013

Invited Presentation at School of Graduate Studies, McMaster University, Hamilton, ON, Canada

LaTeX for Preparation of Scientific Documents and Theses

November 01, 2012

Invited Presentation at School of Graduate Studies, McMaster University, Hamilton, ON, Canada

The Future of Photovoltaics: Next Generation Materials and Devices at McMaster University Engineering Physics

May 01, 2012

Invited Presentation at IEEE Hamilton Chapter Monthly Meeting, Hamilton, ON, Canada

Teaching

Service and Leadership

• Centre de la Petite Enfance Funville, Verdun, QC, Canada, 2019–2021
  • Board Member
• Software Carpentry, Online, 2012–Present
  • Maintainer and Developer, shell-novice lessons
  • Certified Instructor
• McMaster University, Hamilton, ON, Canada
  • Engineering Physics Graduate Advisory Committee Ex-Officio Member, 2013–2014
  • Engineering Physics Professorial Search Comittee, 2010–2011
  • NanoGiga 2009, 14th Canadian Scemiconductor Technology Conference Organizing Committee, 2009
  • Graduate Student Association, Phoenix Executive Committee, 2009–2013
• Nano Ontario, ON, Canada, 2013–2015
  • Board Member At-Large
  • Communications Committee Chair